popvae

Created by Marko Hrženjak, last modified on Jun 27, 2024

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Opis

popVAE uklapa varijacijski autokoder (VAE) u skup genotipova i ispisuje latentni prostor.

Verzije

Verzija	Modul	Supek	Padobran
1.1	scientific/popvae/1.1

Dokumentacija

https://github.com/kr-colab/popvae?tab=readme-ov-file

Primjer

Testni podaci: https://github.com/kr-colab/popvae/tree/master/data/pabu
popvae nema mogućnosti ograničavanja uporabe dretvi, stoga cgrupe oraničavaju

popvae-run.pbs

#PBS -N popvae-test
#PBS -q cpu
#PBS -l select=1:ncpus=12

cd $PBS_O_WORKDIR

module load scientific/popvae/1.1

popvae.sh popvae.py --infile data/pabu/pabu_test_genotypes.vcf --out out/pabu_test --seed 42 --patience 300

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