bcftools

Created by Marko Hrženjak on Nov 28, 2023

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Opis

Error rendering macro 'panel'

com.atlassian.renderer.v2.macro.basic.validator.MacroParameterValidationException: Border style is not a valid CSS2 border-style value

Dostupne verzije:

Verzija	Modul	Supek	Vrančić(Padobran)
1.18	scientific/bcftools/1.18

Primjer korištenja

Dokumentacija: http://samtools.github.io/bcftools/bcftools.html

dmd.pbs

#!/bin/bash

#PBS -N bcftools-test
#PBS -l select=1:ncpus=12:mem=20GB
#PBS -q cpu

cd $PBS_O_WORKDIR

module load scientific/bcftools/1.18


bcftools csq -f hs37d5.fa -g  Homo_sapiens.GRCh38.110.chromosome.1.gff3.gz in.vcf -Ob -t $NCPUS -o out.bcf

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