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- https://github.com/bwa-mem2/bwa-mem2
- SRA: SRR7733443
Code Block language bash fastq-dump --split-files SRR7733443
- ref:
Code Block language bash http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/human_g1k_v37.fasta.gz
Primjeri
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#PBS -N index #PBS -q cpu #PBS -l select=1:ncpus=8:mem=100GB cd $PBS_O_WORKDIR module load bwa-mem2 bwa-mem2 index human_g1k_v37.fasta |
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