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Code Block
languagebash
titlePrimjer
#!/bin/bash
#$ -N Picard-test
#$ -pe p28-mpisingle 8
#$ -cwd

module load bioinfo/Picard/2.27.5

java -XX:ActiveProcessorCount=$NSLOTS -jar $PICARD_HOME/picard.jar SortSam I=test.bam O=test_sorted.bam SO=coordinate
java -XX:ActiveProcessorCount=$NSLOTS -jar $PICARD_HOME/picard.jar BuildBamIndex -I test_sorted.bam

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