Dostupne verzije
| Verzija | Modul |
|---|---|
| 2.27.5 | bioinfo/Picard |
Primjer je skinut sa: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeUwRepliSeq/
#!/bin/bash #$ -N Picard-test #$ -pe p28-mpisingle 8 #$ -cwd module load bioinfo/Picard/2.27.5 java -XX:ActiveProcessorCount=$NSLOTS -jar $PICARD_HOME/picard.jar SortSam I=test.bam O=test_sorted.bam SO=coordinate java -XX:ActiveProcessorCount=$NSLOTS -jar $PICARD_HOME/picard.jar BuildBamIndex -I test_sorted.bam |
Instalacija:
git clone https://github.com/broadinstitute/picard.git cd picard/ ./gradlew shadowJar |