You are viewing an old version of this page. View the current version.

Compare with Current View Page History

Version 1 Current »

Dostupne verzije

VerzijaModul
2.27.5bioinfo/Picard

Primjer je skinut sa: http://hgdownload.cse.ucsc.edu/goldenPath/hg19/encodeDCC/wgEncodeUwRepliSeq/

Primjer
#!/bin/bash
#$ -N Picard-test
#$ -pe p28-mpisingle 8
#$ -cwd

module load bioinfo/Picard/2.27.5

java -XX:ActiveProcessorCount=$NSLOTS -jar picard.jar SortSam I=test.bam O=test_sorted.bam SO=coordinate
java -XX:ActiveProcessorCount=$NSLOTS -jar picard.jar BuildBamIndex -I test_sorted.bam

Instalacija:

Proces
git clone https://github.com/broadinstitute/picard.git
cd picard/
./gradlew shadowJar
  • No labels