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https://github.com/davidemms/OrthoFinder

Dostupne verzije:

VerzijaModul
2.3.8bioinfo/OrthoFinder/2.3.8

Primjer korištenja

Aplikacija OrthoFinder ne radi na pristupnom čvoru zbog dozvola memorije "/dev/shm" ali uredno radi na radnim čvorovima. Prilikom pokretanja poslova potrebno je staviti opciju "-t $NSLOTS" da se ne raširi po čitavom čvoru.

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Code Block
languagebash
titleOrthoFinder.sge
#!/bin/bash
#$ -N test
#$ -cwd

module load bioinfo/OrthoFinder/2.3.8
orthofinder -t $NSLOTS -f /homeapps/mbelavicbioinfo/apps/OrthoFinderOrthoFinder/2.3.8/ExampleData/ -o $PWD/test -S diamond


Code Block
qsub OrthoFinder.sge

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