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  • https://github.com/bwa-mem2/bwa-mem2
  • SRA: SRR7733443


    • Code Block
      languagebash
      fastq-dump --split-files SRR7733443


  • ref:


    • Code Block
      languagebash
      http://ftp.1000genomes.ebi.ac.uk/vol1/ftp/technical/reference/human_g1k_v37.fasta.gz


Primjeri

Code Block
languagebash
titleindex.pbs
linenumberstrue
#PBS -N index
#PBS -q cpu
#PBS -l select=1:ncpus=8:mem=100GB

cd $PBS_O_WORKDIR

module load bwa-mem2

bwa-mem2 index human_g1k_v37.fasta

...