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#!/bin/bash #$ -N Picard-test #$ -pe p28-mpisingle 8 #$ -cwd module load bioinfo/Picard/2.27.5 java -XX:ActiveProcessorCount=$NSLOTS -jar $PICARD_HOME/picard.jar SortSam I=test.bam O=test_sorted.bam SO=coordinate java -XX:ActiveProcessorCount=$NSLOTS -jar $PICARD_HOME/picard.jar BuildBamIndex -I test_sorted.bam |
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