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1.13treemix/1.13

Primjer podnošenja posla. Testni podaci su preuzeti iz https://bitbucket.org/nygcresearch/treemix/downloads/treemix_test_files.tar.gz

treemix-teran.sge

#!/bin/sh

#$ -N treemix-teran

#$ -cwd


# load program environment

module load treemix/1.13


# run the program

treemix -i testin.gz -o out_stem

Preduvjet za instalaciju  bliblioteke boost-devel =>1.42 i gsl-devel. Instalacija je izvršena sa prevoditeljem intel/2020.

Instalirano je lokalno, kasnije prebačeno u /apps/bioinfo.


wget https://bitbucket.org/nygcresearch/treemix/downloads/treemix-1.13.tar.gz

module load intel/2020

CC=icc CXX=icpc

./configure --with-boost=/apps/boost/1.70/avx2/

make && make install

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