https://github.com/ndierckx/NOVOPlasty
NOVOPlasty:
module load gcc/8 PREFIX=/put/do/spades/ ./spades_compile.sh
Dostupne verzije su:
| Verzija | Modul |
|---|---|
| 3.7 | NOVOPlasty/3.7 |
Primjer korištenja
module load NOVOPlasty/3.7 NOVOPlasty3.7.pl
Test run
#!/bin/bash #$ -N NOVOPlasty3.7 #$ -cwd ln -sf /apps/NOVOPlasty/3.7/Test\ datasets/Chloroplast\ assembly/Seed_RUBP.fasta . ln -sf /apps/NOVOPlasty/3.7/Test\ datasets/Chloroplast\ assembly/SRR1328237_1.fasta.gz . ln -sf /apps/NOVOPlasty/3.7/Test\ datasets/Chloroplast\ assembly/SRR1328237_2.fasta.gz . module load NOVOPlasty/3.7 NOVOPlasty3.7.pl -c /apps/NOVOPlasty/3.7/Test\ datasets/Chloroplast\ assembly/config_test_chloro.txt