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2019.1qiime2/qiime2-2019.1

Instalacija

QIIME2 je instaliran unutar conda virtualnog okruženja.

wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh

wget https://data.qiime2.org/distro/core/qiime2-2019.1-py36-linux-conda.yml
conda env create -n qiime2-2019.1 --file qiime2-2019.1-py36-linux-conda.ym


Primjer korištenja:

#!/bin/bash
#$ -N qiime-test
#$ -cwd

module load qiime2/qiime2-2019.1

conda activate qiime2-2019.1

qiime --help

conda deactivate
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