Instalacija Google Sparsehash:
wget -c https://github.com/sparsehash/sparsehash/archive/sparsehash-2.0.3.tar.gz ./configure --prefix=/apps/sparsehash make && make install
ABySS je preveden s Intel 2019 i OpenMPI 3.0 i parametrima:
module load mpi/openmpi3-intel-x86_64 ./configure CC=icc CXX=icpc CPPFLAGS=-I/usr/include/openmpi3-intel-x86_64 --with-mpi=/usr/lib64/openmpi3-intel/ --with-sparsehash=/apps/sparsehash203 --prefix=/apps/abyss214 --disable-openmp
Dostupne verzije su:
| Verzija | Modul |
|---|---|
| 2.1.4 | abyss/2.1.4 |
Primjer korištenja:
module load abyss/2.1.4 abyss-pe np=$NSLOTS name=chr1_1 k=96 in='chr1_1.fa' -se