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VerzijaModul
1.0.3bioinfo/transrate/1.0.3

Korištenje

Primjer
#!/bin/bash
#$ -N transrate_test
#$ -cwd
#$ -pe *mpisingle 6

module load bioinfo/transrate/1.0.3

transrate --assembly test_contig_nc3.fa --reference test_reference_nc1.fa --threads $NSLOTS


Instalacija

source /apps/mambaforge/mamba/bin/activate
mamba create -p /apps/virtenv/transrate/1.0.3 python=3.8
mamba activate /apps/virtenv/transrate/1.0.3
mamba install -c bioconda transrate
mamba install -c biocore blast-plus


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