Versions Compared

Old Version 4

changes.mady.by.user Marko Hrženjak

Saved on

compared with

New Version Current

changes.mady.by.user Marko Hrženjak

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Code Block
languagebash
titleRepeatModeler2
#!/bin/bash

#$ -N modeler
#$ -pe *mpisingle 20
#$ -cwd

module load bioinfo/RepeatTools/repeat_env

#Prije pokretanja potrebno je kreirati bazu
BuildDatabase -name elephant GCF_000001905.1_Loxafr3.0_genomic.fna

RepeatModeler -database elephant -threads $NSLOTS -LTRStruct >& run.out
Code Block
languagebash
titleRepeatMasker
#!/bin/bash

#$ -N masker
#$ -pe *mpisingle 20
#$ -cwd

module load bioinfo/RepeatTools/repeat_env

RepeatMasker --species Loxodonta_africana GCF_000001905.1_Loxafr3.0_genomic.fna -pa $NSLOTS

...