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#PBS -N trinity_test_run
#PBS -q cpu
#PBS -l select=1:ncpus=60:mem=100GB
cd ${PBS_O_WORKDIR}
module load scientific/trinity/2.15.1
Trinity --seqType fq --max_memory 100G --left reads2.left.fq.gz --right reads2.right.fq.gz --SS_lib_type RF --CPU $NCPUS --no_version_check |
| Note |
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Obavezno koristiti opciju --no_version_check na Supeku, jer čvorovi nemaju pristup internetu, a Trinity program zadano provjerava verziju programa. |
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#PBS -N trinity_test_run
#PBS -q cpu_180
#PBS -l select=1:ncpus=60:mem=100GB
cd ${PBS_O_WORKDIR}
module load scientific/trinity/2.15.1
trinity.sh Trinity --seqType fq --max_memory 100G --left reads2.left.fq.gz --right reads2.right.fq.gz --SS_lib_type RF --CPU $NCPUS |
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