...
| Verzija | Modul | Supek | Padobran |
|---|---|---|---|
| 4.4.0.0 | scientific/gatk4/4.4.0.0 |   | |
Službena dokumentacija
- Dostupni alati: gatk-alati
- Git: https://github.com/broadinstitute/gatk
- Službena stranica: https://gatk.broadinstitute.org/hc/en-us
Primjer korištenja
...
| language | bash |
|---|---|
| title | Supek |
| linenumbers | true |
...
| Code Block | ||||||
|---|---|---|---|---|---|---|
| ||||||
#!/bin/bash #PBS -N gatk4-HTcaller #PBS -q cpu #PBS -l select=1:ncpus=1:mem=10GB cd $PBS_O_WORKDIR module load scientific/gatk4/4.4.0.0 gatk4.sh gatk --java-options "-Xmx10G" HaplotypeCaller -R reference.fasta -I input.bam -O output.vcf |
...