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| Verzija | Modul |
|---|---|
| 0.14.1 | bioinfo/Salmon/0.14 |
| 1.9.0 | bioinfo/Salmon/1.9.0 |
| 1.10.0 | bioinfo/Salmon/1.10.0 |
Korištenje
Primjer je preuzet s : ftp://ftp.ensemblgenomes.org/pub/plants/release-28/fasta/arabidopsis_thaliana/cdna/Arabidopsis_thaliana.TAIR10.28.cdna.all.fa.gz -o athal.fa.gz
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- Korišten je prevodioc gcc/9 za verziju 1.9.0
| Code Block | ||||
|---|---|---|---|---|
| ||||
#v1.0.9 wget https://github.com/COMBINE-lab/salmon/archive/refs/tags/v1.9.0.tar.gz tar -xvf v1.9.0.tar.gz cd salmon-1.9.0 mkdir build module load gcc/9 cmake3 CMakeLists.txt -DCMAKE_INSTALL_PREFIX=/home/mhrzenja/Salmon/salmon-1.9.0/build -DBOOST_ROOT=/apps/boost/1.80/ -DNO_IPO=TRUE make make install #v1.10.0 mamba creamamba create -p /apps/bioinfo/salmon/1.10.0 python=3.8 salmon=1.10.0 -c bioconda |