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Verzija | Modul | Supek | Padobran |
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2.15.1 | scientific/Trinity/2.15.1 | ![(tick)](/s/l55c0r/9012/ly29vq/_/images/icons/emoticons/check.svg) | |
Službena dokumentacija
https://github.com/trinityrnaseq/trinityrnaseq/wiki
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Code Block |
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language | bash |
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theme | Midnight |
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title | SUPEK |
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#PBS -N trinity_test_run
#PBS -q cpu
#PBS -l select=1:ncpus=60:mem=100GB
cd ${PBS_O_WORKDIR}
module load scientific/trinity/2.15.1
Trinity --seqType fq --max_memory 100G --left reads2.left.fq.gz --right reads2.right.fq.gz --SS_lib_type RF --CPU $NCPUS --no_version_check |
Note |
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Obavezno koristiti opciju --no_version_check, jer čvorovi nemaju pristup internetu, a Trinity program zadano provjerava verziju programa. |
Code Block |
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language | bash |
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theme | Midnight |
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title | PADOBRAN |
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#PBS -N trinity_test_run
#PBS -q cpu_180
#PBS -l select=1:ncpus=60:mem=100GB
cd ${PBS_O_WORKDIR}
module load scientific/trinity/2.15.1
trinity.sh Trinity --seqType fq --max_memory 100G --left reads2.left.fq.gz --right reads2.right.fq.gz --SS_lib_type RF --CPU $NCPUS --no_version_check |