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#!/bin/bash
#$ -N modeler
#$ -pe *mpisingle 20
#$ -cwd
module load bioinfo/RepeatTools/repeat_env
#Prije pokretanja potrebno je kreirati bazu
BuildDatabase -name elephant GCF_000001905.1_Loxafr3.0_genomic.fna
RepeatModeler -database elephant -threads $NSLOTS -LTRStruct >& run.out |
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#!/bin/bash #$ -N masker #$ -pe *mpisingle 20 #$ -cwd module load bioinfo/RepeatTools/repeat_env RepeatMasker --species Loxodonta_africana GCF_000001905.1_Loxafr3.0_genomic.fna -pa $NSLOTS |
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