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#!/bin/shbash #$ -N modeler #$ -pe *mpisingle 20 #$ -cwd module load bioinfo/RepeatTools/repeat_env #Prije pokretanja potrebno je kreirati bazu BuildDatabase -name elephant GCF_000001905.1_Loxafr3.0_genomic.fna RepeatModeler -database elephant -threads $NSLOTS -LTRStruct >& run.out |
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#!/bin/shbash #$ -N masker #$ -pe *mpisingle 20 #$ -cwd module load bioinfo/RepeatTools/repeat_env RepeatMasker --species Loxodonta_africana GCF_000001905.1_Loxafr3.0_genomic.fna -pa $NSLOTS |
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#!/bin/shbash #$ -N explorer #$ -pe *mpisingle 20 #$ -cwd #$ -l memory=2 module load bioinfo/RepeatTools/repeat_env seqclust -c $NSLOTS -r 41943040 GCF_000001905.1_Loxafr3.0_genomic.fna |
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