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#!/bin/bash #$ -N test #$ -cwd module load bioinfo/interproscan/5.38-76.0 interproscan.sh -cpu $NSLOTS -i /apps/#$ -pe *mpisingle 3 module load bioinfo/interproscan/5.38-76.0/test_proteins.fasta -f tsv interproscan.sh -cpu $NSLOTS -i /apps/bioinfo/interproscan/5.38-76.0/test_proteins.fasta -f tsv -dp interproscan.sh -cpu $NSLOTS -appl Pfam -i /apps/bioinfo/interproscan/5.38-76.0/test_nt_seqs.fasta |
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Nužno je koristiti paralelne okoline *mpisingle jer je aplikacija paralelizirana dijeljenjem memorije (shared memory parallel model) |
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qsub interproscan.sge |
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