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Dostupne verzije
| Verzija | Modul | Supek | Vrančić(Padobran) |
|---|
| 14-7e284 | scientific/MMseqs2/14-7e284 | 
|  |
Primjer korištenja
Primjer je preuzet sa: https://github.com/soedinglab/MMseqs2
| Code Block |
|---|
| language | bash |
|---|
| theme | Midnight |
|---|
| title | mmseqs-easy search |
|---|
|
#!/bin/bash
#PBS -q cpu
#PBS -N mmseqs-test
#PBS -l select=1:ncpus=16
cd $PBS_O_WORKDIR
module load scientific/MMseqs2/14-7e284
mmseqs easy-search QUERY.fasta DB.fasta alnRes.m8 tmp --threads $NCPUS
|
Dostupne baze su učitane kao varijable:
- $NR
- $NT
- $swissprot
- $Uniref50
- $Uniref90
| Code Block |
|---|
| language | bash |
|---|
| theme | Midnight |
|---|
| title | mmseqs-easy search with DB |
|---|
|
#!/bin/bash
#PBS -q cpu
#PBS -N mmseqs-test-DB
#PBS -l select1:ncpus16
cd $PBS_O_WORKDIR
module load scientific/MMseqs2/14-7e284
mmseqs easy-search QUERY.fasta $NR alnRes.m8 tmp |
