https://github.com/ebi-pf-team/interproscan
Dostupne verzije:
| Verzija | Modul |
|---|
| 5.39-76.0 | bioinfo/interproscan/5.38-76.0 |
Primjer korištenja
Prilikom pokretanja poslova potrebno je staviti opciju "-cpu $NSLOTS" da se ne raširi po čitavom čvoru.
| Code Block |
|---|
| language | bash |
|---|
| title | program.sge |
|---|
|
module load bioinfo/interproscan/5.38-76.0
interproscan.sh -h |
...
| Code Block |
|---|
| language | bash |
|---|
| title | interproscan.sge |
|---|
|
#!/bin/bash
#$ -N test
#$ -cwd
module load bioinfo/interproscan/5.38-76.0
interproscan.sh -cpu $NSLOTS -i /apps/#$ -pe *mpisingle 3
module load bioinfo/interproscan/5.38-76.0/test_proteins.fasta -f tsv
interproscan.sh -cpu $NSLOTS -i /apps/bioinfo/interproscan/5.38-76.0/test_proteins.fasta -f tsv -dp
interproscan.sh -cpu $NSLOTS -appl Pfam -i /apps/bioinfo/interproscan/5.38-76.0/test_nt_seqs.fasta |
| Warning |
|---|
|
Nužno je koristiti paralelne okoline *mpisingle jer je aplikacija paralelizirana dijeljenjem memorije (shared memory parallel model) |
| Code Block |
|---|
qsub interproscan.sge |
...