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Verzija | Modul |
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14-7e284 | bioinfo/MMseqs2/14-7e284 |
Korištenje
Primjer 1.
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#!/bin/bash #$ -N mmseq2-test #$ -cwd #$ -pe p28-mpi 298 module load bioinfo/MMseqs2/14-7e284 RUNNER="mpirun -np $NSLOTS" mmseqs easy-search examples/QUERY.fasta examples/DB.fasta alnRes.m8 --threads 1 tmp |
Primjer 2.
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U ovom primjeru se zauzima jedan cijeli čvor s kombinacijom np x threads, umnožak dviju vrijednosti mora biti jednak 28. |
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#!/bin/bash
#$ -N mmseq2-test
#$ -cwd
#$ -pe p28-mpisingle 28
module load bioinfo/MMseqs2/14-7e284
RUNNER="mpirun -np 7" mmseqs easy-search examples/QUERY.fasta examples/DB.fasta alnRes.m8 --threads 4 tmp |
Instalacija
- Korišten je prevodioc gcc/9
- Za mpi je korišten mpi/openmpi41-intel-x86_64
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module load gcc/9
module load mpi/openmpi41-intel-x86_64
git clone https://github.com/soedinglab/MMseqs2.git
cd MMseqs2/
mkdir build
cmake3 CMakeLists.txt -DCMAKE_INSTALL_PREFIX=/home/mhrzenja/mmseqs2/MMseqs2/build -DHAVE_AVX2=1 -DHAVE_MPI=1
make
make install
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