VerzijaModul
14-7e284bioinfo/MMseqs2/14-7e284

Korištenje

Primjer 1.

easy-search
#!/bin/bash

#$ -N mmseq2-test
#$ -cwd
#$ -pe p28-mpi 8 

module load bioinfo/MMseqs2/14-7e284


RUNNER="mpirun -np $NSLOTS" mmseqs easy-search examples/QUERY.fasta examples/DB.fasta alnRes.m8 --threads 1 tmp

Primjer 2.

Napomena

U ovom primjeru se zauzima jedan cijeli čvor s kombinacijom np x threads, umnožak dviju vrijednosti mora biti jednak 28.

easy-search2
#!/bin/bash

#$ -N mmseq2-test
#$ -cwd
#$ -pe p28-mpisingle 28 

module load bioinfo/MMseqs2/14-7e284


RUNNER="mpirun -np 7" mmseqs easy-search examples/QUERY.fasta examples/DB.fasta alnRes.m8 --threads 4 tmp

Instalacija

  • Korišten je prevodioc gcc/9
  • Za mpi je korišten mpi/openmpi41-x86_64


Instalacija
module load gcc/9
module load mpi/openmpi41-x86_64
git clone https://github.com/soedinglab/MMseqs2.git
cd MMseqs2/
mkdir build
cmake3 CMakeLists.txt -DCMAKE_INSTALL_PREFIX=/home/mhrzenja/mmseqs2/MMseqs2/build -DHAVE_AVX2=1 -DHAVE_MPI=1
make
make install
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