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Primjer korištenja
| Code Block | ||||||
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#!/bin/bash
#PBS -N gatk4-HTcaller
#PBS -q cpu
#PBS -l select=1:ncpus=1:mem=10GB
cd $PBS_O_WORKDIR
module load scientific/gatk4/4.4.0.0
gatk --java-options "-Xmx10G" HaplotypeCaller -R reference.fasta -I input.bam -O output.vcf |
| Code Block | ||||||
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#!/bin/bash
#PBS -N gatk4-HTcaller
#PBS -q cpu
#PBS -l select=1:ncpus=1:mem=10GB
cd $PBS_O_WORKDIR
module load scientific/gatk4/4.4.0.0
gatk4.sh gatk --java-options "-Xmx10G" HaplotypeCaller -R reference.fasta -I input.bam -O output.vcf |
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