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#PBS -q cpu
#PBS -l select=8:ncpus=4
#PBS -N gmx

MPI_NUM_PROCESSES=$(cat ${PBS_NODEFILE} | wc -l)

cd ${PBS_O_WORKDIR}

module load scientific/gromacs/2022.5-gnu

mpiexec -n ${MPI_NUM_PROCESSES} -d ${OMP_NUM_THREADS} --cpu-bind depth gmx mdrun -pin on -v -deffnm md

#PBS -q cpu
#PBS -l select=32
#PBS -N gmx

MPI_NUM_PROCESSES=$(cat ${PBS_NODEFILE} | wc -l)

cd ${PBS_O_WORKDIR}

module load scientific/gromacs/2022.5-gnu

mpiexec -n ${MPI_NUM_PROCESSES} gmx mdrun -pin on -v -deffnm md

#PBS -q cpu
#PBS -l ncpus=32
#PBS -N gmx

MPI_NUM_PROCESSES=$(cat ${PBS_NODEFILE} | wc -l)

cd ${PBS_O_WORKDIR}

module load scientific/gromacs/2022.5-gnu

gmx mdrun -pin on -v -deffnm md

#PBS -q gpu
#PBS -l select=1:ngpus=1:ncpus=8
#PBS -N gmx

MPI_NUM_PROCESSES=$(cat ${PBS_NODEFILE} | wc -l)

cd ${PBS_O_WORKDIR}

module load scientific/gromacs/2022.5-cuda

gmx mdrun -pin on -v -deffnm md

#PBS -q gpu
#PBS -l select=2:ngpus=1:ncpus=4
#PBS -N gmx

MPI_NUM_PROCESSES=$(cat ${PBS_NODEFILE} | wc -l)

cd ${PBS_O_WORKDIR}

module load scientific/gromacs/2022.5-cuda

mpiexec -n ${MPI_NUM_PROCESSES} -d ${OMP_NUM_THREADS} --cpu-bind depth gmx mdrun -pin on -v -deffnm md