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Code Block
languagebash
titleeasy-search
#!/bin/bash

#$ -N mmseq2-test
#$ -cwd
#$ -pe p28-mpimpifull 2920 

module load bioinfo/MMseqs2/14-7e284


RUNNER="mpirun -np $NSLOTS" mmseqs easy-search examples/QUERY.fasta examples/DB.fasta alnRes.m8 --threads 1 tmp


Info
titleNapomena

Apllikacija koristi mpirun, stoga je potrebno paziti na broj traženih jezgri. Vodi se kao np x threads.

Instalacija

  • Korišten je prevodioc gcc/9
  • Za mpi je korišten mpi/openmpi41-intel-x86_64

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