Transfer to Galaxy
In the user interface:
Opens the menu:
- Choose local files - upload locally from your computer
- Paste/Fetch data - upload files from the link:
Transfer from Padobrana
An API key is generated in the Galaxy interface:
- User → Preferences → Manage Api Key
Create a new key:
Copy the generated key:
An example of transferring files from Padobran
Primjer uploada sa Padobrana na Galaxy
#load the galaxy-upload module module load utils/galaxy-upload/1.0.1 #load the variable for the api key export GALAXY_API_KEY=#ovdje ide vaš generirani api key # positioning to the desired directory cd bio_data #Upload command consists of the galaxy-upload command, the history name or the history id in which the files are uploaded # i name file #Searching for information on available historical sections galaxy-search-history #Upload file to Galaxy galaxy-upload –-history-name #ime povijesne sekcije) ERR022075_1.fastq #or galaxy-upload –-history-id #id povijesne sekcije) ERR022075_1.fastq #For more info galaxy-upload --help