Transfer to Galaxy

In the user interface:

Opens the menu:

  • Choose local files - upload locally from your computer
  • Paste/Fetch data - upload files from the link:


Transfer from Padobrana

An API key is generated in the Galaxy interface:

  • User → Preferences → Manage Api Key

Create a new key:


Copy the generated key:


An example of transferring files from Padobran

Primjer uploada sa Padobrana na Galaxy
#load the galaxy-upload module
module load utils/galaxy-upload/1.0.1

#load the variable for the api key
export GALAXY_API_KEY=#ovdje ide vaš generirani api key

# positioning to the desired directory
cd bio_data

#Upload command consists of the galaxy-upload command, the history name or the history id in which the files are uploaded
# i name file

#Searching for information on available historical sections
galaxy-search-history

#Upload file to Galaxy
galaxy-upload –-history-name #ime povijesne sekcije) ERR022075_1.fastq
#or
galaxy-upload –-history-id #id povijesne sekcije) ERR022075_1.fastq

#For more info
galaxy-upload --help


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