| Verzija | Moduli |
|---|---|
| 2.2.1 | bioinfo/HISAT2/2.2.1 |
Korištenje:
Primjer 1:
Indeksiranje
#!/bin/bash $# -N HISAT2-indexing $# -pe *mpisingle 4 $# -cwd module load bioinfo/HISAT2/2.2.1 hisat2-build -p $NSLOTS reference/22_20-21M.fa --snp reference/22_20-21M.snp 22_20-21M_snp
Primjer 2:
Poravnavanje
#!/bin/bash #$ -N HISAT2-align #$ -pe *mpisingle 4 $# -cwd module load bioinfo/HISAT2/2.2.1 hisat2 -f -x index/22_20-21M_snp -U reads/reads_1.fa -S eg1.sam
Instalacija:
Instalacija HISAT2
git clone https://github.com/DaehwanKimLab/hisat2.git cd hisat2 make