VerzijaModuli
2.2.1bioinfo/HISAT2/2.2.1


KoriĊĦtenje:

Primjer 1:

#!/bin/bash
$# -N HISAT2-indexing
$# -pe *mpisingle 4
$# -cwd

module load bioinfo/HISAT2/2.2.1

hisat2-build -p $NSLOTS reference/22_20-21M.fa --snp reference/22_20-21M.snp 22_20-21M_snp


Primjer 2:

#!/bin/bash
#$ -N HISAT2-align
#$ -pe *mpisingle 4
$# -cwd

module load bioinfo/HISAT2/2.2.1

hisat2 -f -x index/22_20-21M_snp -U reads/reads_1.fa -S eg1.sam


Instalacija:

git clone https://github.com/DaehwanKimLab/hisat2.git
cd hisat2
make