Opis
Dostupne verzije
Dokumentacija
Bionano solve se sastoji od mnoštvo skripti i izvršnih datoteka. Sadržaj nekih je opisan niže.
$Pipeline
Pipeline.py align_bnx_to_cmap.py alignment.py assemble.py autonoise.py bam_conversion.py batch_cleanup bnx.py characterize.py clusterArguments.xml clusterArgumentsBG.xml clusterArgumentsBG2_aws.xml clusterArgumentsBG3_aws.xml clusterArgumentsBG_3100.xml clusterArgumentsBG_aws.xml clusterArgumentsBG_nfs1.xml clusterArgumentsBG_saphyr_phi.xml clusterArgumentsHC.xml clusterArgumentsHC_nfs1.xml clusterArguments_3100.xml clusterArguments_7100.xml clusterArguments_Amber.xml clusterArguments_Carbon.xml clusterArguments_access.xml clusterArguments_aws.xml clusterArguments_awsC5n.xml clusterArguments_awsM5.xml clusterArguments_awsR5.xml clusterArguments_aws_batch.xml clusterArguments_nfs1.xml clusterArguments_saphyr.xml clusterArguments_saphyr4.xml clusterArguments_saphyr4_slurm.xml clusterArguments_saphyr_phi.xml clusterArguments_saphyr_slurm.xml clusterArguments_saphyr_supermicro.xml clusterArguments_saphyr_supermicro_slurm.xml clusterArguments_stratys_slurm_constitutional_3gpu.xml clusterArguments_stratys_slurm_constitutional_4gpu.xml clusterArguments_stratys_slurm_laf_3gpu.xml clusterArguments_stratys_slurm_laf_4gpu.xml cmap.py cnv.py confidencescores.py config.py definitions.py extract_mols.py filetypes.py fileutils.py grouped_refinement.py lohdetection_pipeline.py mapClasses.py merging.py mthreading.py pairwise.py pipelineCL.py pipeline_script_template.sh reports.py runAlignMol.py runCharacterize.py runSV.py run_targeted_assembly.py svdetect.py utilities.py vaf_pipeline.py vap_alignmol.py vap_caller.py varcluster.py
Također izvršne datoteke su dodane u $PATH, popis se nalazi niže.
$PATH izvršne datoteke
checkMPS.sh clusterArguments_Graphite.xml clusterArguments_Titanium.xml compressPipeline.sh filter_SNR_dynamic.pl irys_db_tool.R runDenovo run_aws runpipe variant_clustering Assembler RefAligner ColorSplit.pl MQR.pl V3_Cohort_QC.pl demultiplex.sh filter_SNR_dynamic.pl
Primjer