Verzija | Modul |
---|---|
4.1 | bioinfo/cutadapt/4.1 |
Korištenje:
Datoteke korištene u primjerima: https://zenodo.org/record/3736457
Primjer 1:
Trimmer
#!/bin/bash #$ -N cutadapt-simple #$ -pe a16-mpisingle 2 #$ -cwd module load bioinfo/cutadapt/4.1 cutadapt -u -100 -o trimmed.fastq sample_1.fastq.gz
Primjer 2:
Trimmer sa više jezgri
#!/bin/bash #$ -N cutadapt-simple #$ -pe a16-mpisingle 10 #$ -cwd module load bioinfo/cutadapt/4.1 cutadapt -j $NSLOTS -u -100 -o trimmed.fastq sample_1.fastq.gz
Instalacija
conda instalacija
conda create -p /apps/virtenv/cutadapt4.1 conda activate /apps/virtenv/cutadapt4.1 conda install -c bioconda cutadapt cutadapt --version