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| Verzija | Modul |
|---|---|
1.40.4 | mothur/1.40.4 |
1.48.0 | mothur/1.48.0 |
Mothur se koristi interaktivno stoga kad proslijeđujemo u obliku command line-a pišemoje po prirodi interaktivan program, no postoji način i upisivanja direktno u terminal bez ulaženja u mothur-ovu konzolu.
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mothur "#dist.seqs(fasta=final.fasta, processors=12)" #lančanje naredbi mothur "#dist.seqs(fasta=final.fasta, processors=12);cluster(column=current, count=final.count_table);collect.single();rarefaction.single()" |
Dokumentacija naredbi: Potpuna okumentacija naredbi je dostupna na https://mothur.org/wiki/tags/#file_types
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OPTIMIZE ?= yes USEREADLINE ?= no USEBOOST ?= yes USEHDF5 ?= yes USEGSL ?= yes LOGFILE_NAME ?= no BOOST_LIBRARY_DIR ?= /apps/boost/1.70/avx2/lib BOOST_INCLUDE_DIR ?= /apps/boost/1.70/avx2/include/boost HDF5_LIBRARY_DIR ?= /apps/hdf5/1.13.0_fortran_cxx/lib HDF5_INCLUDE_DIR ?= /apps/hdf5/1.13.0_fortran_cxx/include GSL_LIBRARY_DIR ?= /apps/gsl/2.7.1/lib GSL_INCLUDE_DIR ?= /apps/gsl/2.7.1/include MOTHUR_FILES="\"Enter_your_default_path_here\"" MOTHUR_TOOLS="\"Enter_your_mothur_tools_path_here\"" VERSION = "\"1.48.0\"" RELEASE_DATE = "\"5/20/22\"" |
Instalacija je izvršena s prevoditeljem openmpi41-intel-x86_64
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