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| Code Block |
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| language | bash |
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| title | Primjer korištenja: mothur-teran.sge |
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#!/bin/bash
#$ -cwd
#$ -pe *mpimpisingle 16
# load program environment
module load mothur/1.48.0
# run the program
mothur "#make.contigs(file=stability.files, processors=16$NSLOTS)" |
| Warning |
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Isključivo se koristiti sa *mpisingle 2-28 ili *mpifull 28. |
Prije instalacije same aplikacije, instalirane su potrebne knjižnice.
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| Code Block |
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| language | bash |
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| title | Makefile |
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USEREADLINE ?= no
USEBOOST ?= yes
USEHDF5 ?= yes
USEGSL ?= yes
BOOST_LIBRARY_DIR ?= /apps/boost/1.70/avx2/lib
BOOST_INCLUDE_DIR ?= /apps/boost/1.70/avx2/include/boost
HDF5_LIBRARY_DIR ?= /apps/hdf5/1.13.0_fortran_cxx/lib
HDF5_INCLUDE_DIR ?= /apps/hdf5/1.13.0_fortran_cxx/include
GSL_LIBRARY_DIR ?= /apps/gsl/2.7.1/lib
GSL_INCLUDE_DIR ?= /apps/gsl/2.7.1/include
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Instalacija je izvršena s prevoditeljem mpi/openmpi41-intel-x86_64intel/2020
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module load mpi/openmpi41-intel-x86_64intel/2020
export LD_LIBRARY_PATH=/apps/boost/1.70/avx2/lib:/apps/hdf5/1.13.0_fortran_cxx/lib:/apps/gsl/2.7.1/lib:$LD_LIBRARY_PATH
cd mothur-1.48.0
make -j8 CC=mpiccicc CXX=mpicxxicpc |