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Code Block
languagebash
themeMidnight
title2. herro-create_batched_alignmentsids
#PBS -N herro_clean
#PBS -q cpu
#PBS -l select=1:ncpus=4010:mem=200GB20GB

cd $PBS_O_WORKDIR

module load scientific/herro/0.1.0

herro.sh create_batched_alignments.sh seqkit seq -ni hg002v1.0.out.fastq.gz > hg002v1.0_ids $NCPUS batches
Code Block
languagebash
themeMidnight
title3. herro-idscreate_batched_alignments
#PBS -N herro_clean
#PBS -q cpu
#PBS -l select=1:ncpus=1040:mem=20GB200GB

cd $PBS_O_WORKDIR

module load scientific/herro/0.1.0

herro.sh seqkit seq -nicreate_batched_alignments.sh hg002v1.0.out.fastq.gz > hg002v1.0_ids $NCPUS batches
  • 2 modela su dostupna pod varijablom varijablom $MODELS
    • model_R9_v0.1.pt(eksperimentalni)
    • model_v0.1.pt

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