Versions Compared

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...

Code Block
languagebash
themeEmacs
titleTOGA_no_nextflow.sge
#!/bin/sh
#$ -N tg
#$ -pe p28-mpisingle 2
#$ -cwd
#$ -R y
#$ -l memory=15

module load bioinfo/TOGA/1.1.2


toga.py test_input/hg38.mm10.chr11.chain test_input/hg38.genCode27.chr11.bed hg38.2bit mm10.2bit --kt --pn test -i supply/hg38.wgEncodeGencodeCompV34.isoforms.txt --chn $NSLOTS --cjn $NSLOTS --u12 supply/hg38.U12sites.tsv --ms 

...