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$!/bin/bash
#$ -N SMR-test
#$ -cwd
#$ -pe *mpisingle 12

module load bioinfo/SortMeRna/4.3.6

sortmerna -ref $RNADB/smr_v4.3_default_db.fasta -reads set2set5_simulated_environmentalamplicon_studysilva_550bac_amplicon16s.fasta -sam -fastx -blast 1 -num_alignments 1 -v --workdir . --threads $NUMSLOTS