Dostupne verzije su:
| Verzija | Modul |
|---|
| 2019.1 | qiime2/qiime2-2019.1 |
| 2019.4 | qiime2/qiime2-2019.4 |
| 2019.10 | qiime2/qiime2-2019.10 |
2021.2 | qiime2/qiime2-2021.2 |
2022.11 | qimme2/2022.11
|
Primjer korištenja:
| Code Block |
|---|
#!/bin/bash
#$ -N qiime-test
#$ -cwd
module load qiime2/qiime2-2019.X
source activate qiime2-2019.X
qiime --help
source deactivate |
| Code Block |
|---|
| language | bash |
|---|
| title | Verzija 2022.11 |
|---|
|
#!/bin/bash
#$ -N qiime-test
#$ -cwd
module load qiime2/qiime2-2022.11
qimme info |
Instalacija
QIIME2 je instaliran unutar conda virtualnog okruženja.
Instalacija Miniconde:
| Code Block |
|---|
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh
|
Kreiranje conda virtualnog okruženja:
| Code Block |
|---|
wget https://data.qiime2.org/distro/core/qiime2-2019.1-py36-linux-conda.yml
conda env create -n qiime2-2019.1 --file qiime2-2019.1-py36-linux-conda.yml |
| Code Block |
|---|
| language | bash |
|---|
| title | Instalacija ver 2022.11 |
|---|
|
source /apps/miniforge/bin/activate
conda env create -p /apps/virtenv/qiime2/ --file apps/virtenv/qiime2/qiime2-2022.11-py38-linux-conda.yml
conda activate /apps/virtenv/qiime2 |