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Dostupne verzije su:

VerzijaModul
2019.1qiime2/qiime2-2019.1
2019.4qiime2/qiime2-2019.4
2019.10qiime2/qiime2-2019.10

2021.2

qiime2/qiime2-2021.2

2022.11

qimme2/2022.11

Primjer korištenja:

Code Block
#!/bin/bash
#$ -N qiime-test
#$ -cwd

module load qiime2/qiime2-2019.X

source activate qiime2-2019.X

qiime --help

source deactivate


Code Block
languagebash
titleVerzija 2022.11
#!/bin/bash
#$ -N qiime-test
#$ -cwd

module load qiime2/qiime2-2022.11

qimme info

Instalacija

QIIME2 je instaliran unutar conda virtualnog okruženja.

Instalacija Miniconde:

Code Block
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh

Kreiranje conda virtualnog okruženja:

Code Block
wget https://data.qiime2.org/distro/core/qiime2-2019.1-py36-linux-conda.yml
conda env create -n qiime2-2019.1 --file qiime2-2019.1-py36-linux-conda.yml


Code Block
languagebash
titleInstalacija ver 2022.11
source /apps/miniforge/bin/activate
conda env create -p /apps/virtenv/qiime2/ --file apps/virtenv/qiime2/qiime2-2022.11-py38-linux-conda.yml
conda activate /apps/virtenv/qiime2