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Procjenjuje podrijetlo metodom maksimalne vjerojatnosti za velike skupove podataka genotipa SNP, gdje se pretpostavlja da pojedinci nisu u srodstvu.
Dostupne verzije
| Verzija | Modul | Supek | Padobran |
|---|
| 0.1.0 | scientific/ |
BA3haploADMIXTURE/0.1.0 |  | 
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Službena dokumentacija
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| Code Block |
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| language | bash |
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| theme | Midnight |
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| title | hA-test |
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#PBS -N hap_admix_test
#PBS -q cpu
#PBS -l select=1:ngpusncpus=8:mem=10gb
cd ${PBS_O_WORKDIR}
module load scientific/haploADMIXTURE/0.1.0
hA.sh julia -t $NCPUS input.jl |
| Code Block |
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| theme | Midnight |
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| title | input.jl |
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using LinearAlgebra, Random, SnpArrays, StableRNGs
using HaploADMIXTURE
using DelimitedFiles
filename = SnpArrays.datadir("EUR_subset.bed");
d, clusters, aims = HaploADMIXTURE.run_admixture(filename, 379, 27025, 4; T=Float64, rng=StableRNG(7856), admix_rtol=1e-5) |
