Transfer to Galaxy
In the user interface:
Opens the menu:
- Choose local files - upload locally from your computer
- Paste/Fetch data - upload files from the link:
Transfer from Padobrana
An API key is generated in the Galaxy interface:
- User → Preferences → Manage Api Key
Create a new key:
Copy the generated key:
An example of transferring files from Padobran
| Code Block | ||||||
|---|---|---|---|---|---|---|
| ||||||
#load the galaxy-upload module
module load utils/galaxy-upload/1.0.1
#load the variable for the api key
export GALAXY_API_KEY=#ovdje ide vaš generirani api key
# positioning to the desired directory
cd bio_data
#Upload command consists of the galaxy-upload command, the history name or the history id in which the files are uploaded
# i name file
#Searching for information on available historical sections
galaxy-search-history
#Upload file to Galaxy
galaxy-upload –-history-name #ime povijesne sekcije) ERR022075_1.fastq
#or
galaxy-upload –-history-id #id povijesne sekcije) ERR022075_1.fastq
#For more info
galaxy-upload --help |