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Verzija | Modul |
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2.1.6 | bioinfo/DIAMOND/2.1.6 |
2.1.7 | bioinfo/DIAMOND/2.1.7 |
Korištenje:
Primjer je skinut s : https://scop.berkeley.edu/downloads/scopeseq-2.07/astral-scopedom-seqres-gd-sel-gs-bib-40-2.07.fa
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Code Block |
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language | bash |
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title | cluster.sge |
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#!/bin/sh
#$ -N clustering
#$ -pe *mpisingle 8
#$ -cwd
#$ -l memory=5
module load bioinfo/DIAMOND/2.1.6
diamond cluster -d astral-scopedom-seqres-gd-sel-gs-bib-95-2.07.fa -o clusters.tsv --approx-id 40 -M 40G --header --threads $NSLOTS
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Instalacija:
Code Block |
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source /apps/mambaforge/mamba/bin/activate
mamba create -p /apps/virtenv/DIAMOND/2.1.6 -c bioconda diamond |
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