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#!/bin/bash #$ -N test_raxml_hybrid #$ -cwd #$ -pe28pe p28-mpisingle 20 module load bioinfo/raxml/8.2.12 mpirun -np 4 raxmlHPC-HYBRID-AVX2 -T 5 -f a -x 648814 -p 648814 -N 1000 -m PROTGAMMAIPMBF -k -O -o Telestes_Souffia -n combinedFastaFINALraxml.tre -s /home/imitrovi/spojeni_fna/combinedFastaFINAL.msa -w /home/imitrovi/spojeni_fna/output_dir |
Instalacija:
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$ git clone https://github.com/stamatak/standard-RAxML.git $ module load mpi/openmpi41-intel-x86_64 $ mv Makefile.AVX2.HYBRID.gcc Makefile.AVX2.HYBRID.icc $ mv Makefile.AVX2.MPI.gcc Makefile.AVX2.HYBRID.icc $ make -f Makefile.AVX2.HYBRID.icc $ rm *.o $ make -f Makefile.AVX2.MPI.icc $ rm *.o |
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