https://www.ncbi.nlm.nih.gov/guide/data-software/
Dostupne verzije:
| Verzija | Modul |
|---|
| 2.9.0 | bioinfo/NCBI-BLAST++/2.9.0 |
| 2.10.0 | bioinfo/NCBI-BLAST++/2.10.0 |
Primjer korištenja
| Code Block |
|---|
| language | bash |
|---|
| title | program.sge |
|---|
|
module load bioinfo/NCBI-BLAST++/2.10.0
blastp -help |
...
| Code Block |
|---|
| language | bash |
|---|
| title | blast.sge |
|---|
|
#!/bin/bash
#$ -N blast
#$ -cwd
#$ -pe *mpi 8
#$ -l exclusive=1
module load bioinfo/NCBI-BLAST++/2.10.0
blastp -db $BLASTDB/nr -query seq.fasta -num_threads $NSLOTS -out seq.out |
Parametri instalacije aplikacije
Prevođenje:
| Code Block |
|---|
module load intel/2019
wget ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.10.0+-src.tar.gz
tar -xvf ncbi-blast-2.10.0+-src.tar.gz
cd ~/ncbi-blast-2.10.0+-src/c++/compilers/unix
./ICC.sh
cd ../../ReleaseMT/build
make all_r -j 4
./install.sh ncbi-blast-bin --srcdir=.
# preuzimanje baze blastdp
cd /apps/bioinfo/NCBI-BLAST++/BlastDB
update_blastdb.pl --blastdb_version 4 nr --decompress
cd /apps/bioinfo/NCBI-BLAST++/BlastDB/v5
update_blastdb.pl --blastdb_version 5 nr --decompress |
...