#!/bin/bash
#$ -N valvetvelvet
#$ -cwd
#$ -pe *mpi 4
module load velvet/1.2.10
export OMP_NUM_THREADS=$NSLOTS
velveth sillyDirectory 21 -shortPaired /apps/velvet/1.2.10/data/test_reads.fa
velvetg sillyDirectory
less sillyDirectory/stats.txt
velvetg sillyDirectory -cov_cutoff 5 -read_trkg yes -amos_file yes
less sillyDirectory/velvet_asm.afg
velvetg sillyDirectory -cov_cutoff auto
velvetg sillyDirectory -exp_cov 19 -ins_length 100
velvetg sillyDirectory -exp_cov auto
velveth sillyDirectory 21 -short /apps/velvet/1.2.10/data/test_reads.fa -long /apps/velvet/1.2.10/data/test_long.fa
velvetg sillyDirectory -exp_cov 19
velvetg sillyDirectory -exp_cov auto |