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| Verzija | Modul |
|---|
| 2019.1 | qiime2/qiime2-2019.1 |
| 2019.4 | qiime2/qiime2-2019.4 |
Primjer korištenja:
| Code Block |
|---|
#!/bin/bash
#$ -N qiime-test
#$ -cwd
module load qiime2/qiime2-2019.X
source activate qiime2-2019.X
qiime --help
source deactivate |
Instalacija
QIIME2 je instaliran unutar conda virtualnog okruženja.
| Code Block |
|---|
#instalacija miniconde
wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh
#kreiranje conda virtual environmenta za qiime2
wget https://data.qiime2.org/distro/core/qiime2-2019.1-py36-linux-conda.yml
conda env create -n qiime2-2019.1 --file qiime2-2019.1-py36-linux-conda.yml |
Primjer korištenja:
| Code Block |
|---|
#!/bin/bash
#$ -N qiime-test
#$ -cwd
module load qiime2/qiime2-2019.1
source activate qiime2-2019.1
qiime --help
source deactivate |