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QIIME2 se instalira unutar conda virtualnog okruženja.
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wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh
wget https://data.qiime2.org/distro/core/qiime2-2019.1-py36-linux-conda.yml
conda env create -n qiime2-2019.1 --file qiime2-2019.1-py36-linux-conda.ym |
Primjer korištenja:
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#!/bin/bash #$ -N qiime-test #$ -cwd #$ -pe gpu 1 #$ -o output/ #$ -e output/ module load qiime2/qiime2-2019.1 conda activate qiime2-2019.1 qiime --help conda deactivate |
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