Pipeline.py
align_bnx_to_cmap.py
alignment.py
assemble.py
autonoise.py
bam_conversion.py
batch_cleanup
bnx.py
characterize.py
clusterArguments.xml
clusterArgumentsBG.xml
clusterArgumentsBG2_aws.xml
clusterArgumentsBG3_aws.xml
clusterArgumentsBG_3100.xml
clusterArgumentsBG_aws.xml
clusterArgumentsBG_nfs1.xml
clusterArgumentsBG_saphyr_phi.xml
clusterArgumentsHC.xml
clusterArgumentsHC_nfs1.xml
clusterArguments_3100.xml
clusterArguments_7100.xml
clusterArguments_Amber.xml
clusterArguments_Carbon.xml
clusterArguments_access.xml
clusterArguments_aws.xml
clusterArguments_awsC5n.xml
clusterArguments_awsM5.xml
clusterArguments_awsR5.xml
clusterArguments_aws_batch.xml
clusterArguments_nfs1.xml
clusterArguments_saphyr.xml
clusterArguments_saphyr4.xml
clusterArguments_saphyr4_slurm.xml
clusterArguments_saphyr_phi.xml
clusterArguments_saphyr_slurm.xml
clusterArguments_saphyr_supermicro.xml
clusterArguments_saphyr_supermicro_slurm.xml
clusterArguments_stratys_slurm_constitutional_3gpu.xml
clusterArguments_stratys_slurm_constitutional_4gpu.xml
clusterArguments_stratys_slurm_laf_3gpu.xml
clusterArguments_stratys_slurm_laf_4gpu.xml
cmap.py
cnv.py
confidencescores.py
config.py
definitions.py
extract_mols.py
filetypes.py
fileutils.py
grouped_refinement.py
lohdetection_pipeline.py
mapClasses.py
merging.py
mthreading.py
pairwise.py
pipelineCL.py
pipeline_script_template.sh
reports.py
runAlignMol.py
runCharacterize.py
runSV.py
run_targeted_assembly.py
svdetect.py
utilities.py
vaf_pipeline.py
vap_alignmol.py
vap_caller.py
varcluster.py | 